Troubleshooting NixOS and ZFS

Fri, 22 Oct 2021 20:50:00 +0000

Incident on 21/10/2021. NixOS ZFS partition on laptop reported 0 available bytes on all pools.

Teardown:

Tried to setup Android Studio with emulator capabilities on my NixOS machine
- Installed a bunch of packages.
- Nix the package manager sucks up a lot of storage if not properly scrubbed.
- Installed and built so much on my machine that suddenly nothing worked anymore.
du reported 100% full on everything.
- Started getting so weird that my command line prompt started printing random stuff since it couldn’t create a tmp file.
- I could not collect garbage with nix-collect-garbage since it couldn’t create a lock file.
Rebooted the machine, wrong call.
- Most services enabled at boot reported failure to start.
- Got to login screen.
  - Non-existent users very denied entry.
  - Existing users (root and my cookie) passed the login, but due to no available space were thrown back into a login.
Troubleshooting with built-in tools.
- Laptop firmware settings unable to help.
- Lenovo has SMART tools available.
  - Did not report hardware error on disk.
  - All SMART attributes seemed in order.
Nikola flashed a USB with an ISO of NixOS.
- Able to access a command line with my system.
- smartctl -a/x confirmed no hardware errors present.
- Also tried to use Finnix, did not assist me due to too old built-in version of ZFS (v23 vs v28 on Nix).
  - Thought NixOS wouldn’t have tools for ZFS, but both zpool and zfs are available.
Tried to get access to my ZFS pool (rpool).
- Imported all ZFS pools available.
- Loaded encryption keys for pool.
- Mounted dataset through mount as datasets were of type legacy.
```
zpool import -a
zfs list -a
zfs load-key -a
mount -t zfs rpool/home /mnt/rec
```
Attempt to backup /home to external drive.
- 70GB of data.
- External drive was connect with USB, so extremely slow.
  - Learnt that cp does not have an internal mechanism for progress report.
  - You can, however, get the cp process ID and then watch the opened files and object reference from /proc/<id>.
```
pgrep -x cp            # -x gets exact and only the ID
cat /proc/<id>/fdinfo  # gets object reference
ls -l /proc/<id>/      # lists open files
```
- Due to enormous write size (and impatience) the external (NTFS) drive’s MFS got corrupted due to lazy umount.
  - Tried to salvage with ntfsfix on NixOS command line, no success.
  - Final option is to use chkdsk on a Windows machine, but that can take around 8 hours per TB.
Attempt to garbage collect rpool/root/nixos manually.
- nix-env allows for defining system profile.
- Idea was to delete old NixOS generations to free up space.
```
nix-env -p /mnt/rec/nix/var/nix/profiles/system
```
- Failed again due to no disk space.
Started reading up on ZFS snapshots.
- ZFS snapshots do not take storage space before something changes on disk.
- My machine has automatic ZFS snapshots by a monthly, weekly, daily, hourly, and “frequent” cadence.
- THEORY:
  - Due to the snapshots running in the background all of the referenced storage from zfs list reported the full size.
    - Referenced storage “represents the total amount of space referenced by the active share, independent of snaphost … the share would consume should all snapshots be destroyed”.
  - Thus deleting files didn’t report more available space.
- Deleted some of the newer snapshots to free 14.1 GB.
- Deleting old generations now worked.
```
nix-env -p /mnt/rec/nix/var/nix/profiles/system --delete-generations 30d
```
Finally able to login into system and GC.
- Followed NixOS doumentation to GC properly.
Next steps are:
- to implement the documentation steps for automated GC,
- setup proper backups to my server for critical files,
- invest in a proper harddrive that snapshots and larger files can be exported to.

incident on Digital Garden

Troubleshooting NixOS and ZFS

Teardown: